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Division of Transdimensional Life Imaging, Institute for Open and Transdisciplinary Research Initiatives, Osaka University

PUBLICATIONS

Original papers

  1. Nagai Y, Kisaka Y, Nomura K, Nishitani N, Andoh C, Koda M, Kawai H, Seiriki K, Nagayasu K, Kasai A, Shirakawa H, Nakazawa T, Hashimoto H, Kaneko S.
    "Dorsal raphe serotonergic neurons preferentially reactivate dorsal dentate gyrus cell ensembles associated with positive experience."
    Cell Rep 42: 112149 (2023).
  2. Nozaki T, Shinkai S, Ide S, Higashi K, Tamura S, Shimazoe MA, Nakagawa M, Suzuki Y., Okada Y, Sasai M, Onami S, Kurokawa K, Iida S, Maeshima K.
    "Condensed but liquid-like domain organization of active chromatin regions in living human cells."
    Sci Adv 11, eadf1488 (2023).
  3. Okuzumi, A, Hatano, T, Matsumoto, G, Nojiri, S, Ueno, S, Imamichi Y, Kimura, H, Kakuta, S, Kondo, A, Fukuhara, T, Li, Y, Funayama, M, Saiki, S, Taniguchi, D, Tsunemi, T, McIntyre, D, Gerardy, J, Mittelbronn, M, Kruger, R, Uchiyama, Y, Nukina, N, Hattori, N.
    "Propagative α-synuclein seeds as serum biomarkers for synucleinopathies."
    Nat Medicine 29, 1448?55 (2023).
  4. Kawano S, Baba M, Fukushima H, Miura D, Hashimoto H, Nakazawa T.
    "Autism-associated ANK2 regulates embryonic neurodevelopment."
    Biochem Biophys Res Commun 605:45-50 (2022).
  5. Jin J, Ogawa T, Hojo N, Kryukov K, Shimizu K, Ikawa T, Imanishi T, Okazaki T, Shiroguchi K.
    "Robotic data acquisition with deep learning enables cell image-based prediction of transcriptomic phenotypes."
    Proc Natl Acad. Sci USA 120 (1): e2210283120 (2022).
  6. Jin J, Yamamoto R, Takeuchi T, Cui G, Miyauchi E, Hojo N, Ikuta K, Ohno H, Shiroguchi K.
    “High-throughput identification and quantification of single bacterial cells in the microbiota.”
    Nat Commun 13: 863 (2022).
  7. Sattari S, Basak U, James R, Perrin L, Crutchfield J, Komatsuzaki T.
    “Modes of information flow in collective cohesion.”
    Sci Adv, 8: 6 (2022).
  8. Maruhashi T, Sugiura D, Okazaki IM, Shimizu K, Maeda TK, Ikubo J, Yoshikawa H, Maenaka K, Ishimaru N, Kosako H, Takemoto T, Okazaki T.
    “Binding of LAG-3 to stable peptide-MHC class II limits T cell function and suppresses autoimmunity and anti-cancer immunity.”
    Immunity 55(5): 912-924 (2022).
  9. Sugiura D, Okazaki IM, Maeda TK, Maruhashi T, Shimizu K, Arakaki R, Takemoto T, Ishimaru N, Okazaki T.
    “PD-1 agonism by anti-CD80 inhibits T cell activation and alleviates autoimmunity.”
    Nat Immun 23: 399-410 (2022).
  10. Jahan A, Akter MT, Takemoto K, Oura T, Shitara A, Semba S, Nezu A, Suto S, Nagai T, Tanimura A.
    “Insertion of circularly permuted cyan fluorescent protein into the ligand-binding domain of inositol 1,4,5-trisphosphate receptor for enhanced FRET upon binding of fluorescent ligand”
    Cell calcium 108: 102668 (2022).
  11. Kaneshiro J, Shioi G, Okamoto K, Onami S, Watanabe TM.
    "Improvement in image quality via the pseudo confocal effect in multidirectional digital scanned laser light-sheet microscopy."
    Opt Express 29: 24278-24288 (2021).
  12. T. Ichimura, T. Kakizuka, K. Horikawa, K. Seiriki, A. Kasai, H. Hashimoto, K. Fujita, T. M. Watanabe & T. Nagai
    Exploring rare cellular activity in more than one million cells by a transscale scope
    Scientific Reports volume 11, Article number: 16539 (2021)
    https://doi.org/10.1038/s41598-021-95930-7
  13. Tran Q, Osabe K, Entani T, Nagai T
    A novel petal up-regulated PhXTH7 promoter analysis in Petunia hybrida by using bioluminescence reporter gene
    Plant Biotechnology, accepted(2021)
  14. A photoswitchable fluorescent protein for hours-time-lapse and sub-second-resolved super-resolution imaging
    T. Wazawa, R. Noma, S. Uto, K. Sugiura, T. Washio, T. Nagai
    Microscopy,doi.org/10.1093/jmicro/dfab001, Jan 2021
  15. Itoh Y*, Hattori M*, Wazawa T, Arai Y, Nagai T (*co-first authors)
    Ratiometric bioluminescent indicator for simple and rapid diagnosis of bilirubin
    ACS Sensors, 6, 889?895, 2021
  16. T. Kubo, K. Temma, N. I. Smith, K. Lu, T. Matsuda, T. Nagai, and K. Fujita,
    "Hyperspectral two-photon excitation microscopy using visible wavelength,"
    Opt. Lett., 46 (1) 37?40 (2021).
  17. Timea Kvarik・ Dora Reglodi・Dora Werling・ Alexandra Vaczy・ Petra Kovari・ Edina Szabo・ Krisztina Kovacs・ Hitoshi Hashimoto・ Tibor Ert・ Judit Gyarmati・ Tamas Atlasz,
    The Protective Effects of Endogenous PACAP in Oxygen?Induced Retinopathy
    "Journal of Molecular Neuroscience, Vol.:(0123456789)1 3
    https://doi.org/10.1007/s12031-021-01846-2" April 2021
  18. Yuki Kambe, Yu Yamauchi, Trung Thanh Nguyen, Thu Thi Nguyen, Yukio Ago, Norihito Shintani, Hitoshi Hashimoto, Shimako Yoshitake, Takashi Yoshitake, Jan Kehr, Namiko Kawamura, Goro Katsuura, Takashi Kurihara, Atsuro Miyata
    The pivotal role of pituitary adenylate cyclase-activating polypeptide for lactate production and secretion in astrocytes during fear memory
    "Pharmacol Rep. 2021 Apr 9.
    doi: 10.1007/s43440-021-00222-6. Online ahead of print.
    PMID: 33835466" April 2021
  19. Satoshi Yoshinaga, Minkyung Shin, Ayako Kitazawa, Kazuhiro Ishii, Masato Tanuma, Atsushi Kasai, Hitoshi Hashimoto, Ken-Ichiro Kubo, Kazunori Nakajima
    Comprehensive characterization of migration profiles of murine cerebral cortical neurons during development using FlashTag labeling
    "iScience. 2021 Mar 6;24(4):102277.　doi: 10.1016/j.isci.2021.102277.
    eCollection 2021 Apr 23. PMID: 33851097 PMCID: PMC8022222"
  20. Kohei Kitagawa, Kensuke Matsumura, Masayuki Baba, Momoka Kondo, Tomoya Takemoto, Kazuki Nagayasu, Yukio Ago, Kaoru Seiriki, Atsuko Hayata-Takano, Atsushi Kasai, Kazuhiro Takuma , Ryota Hashimoto, Hitoshi Hashimoto, Takanobu Nakazawa
    Intranasal oxytocin administration ameliorates social behavioral deficits in a POGZ WT/Q1038R mouse model of autism spectrum disorder
    "Mol Brain. doi: 10.1186/s13041-021-00769-8.
    PMID: 33726803 PMCID: PMC7962304
    2021 Mar 16;14(1):56." Mar 2021
  21. Misaki Niu, Atsushi Kasai, Kaoru Seiriki, Misuzu Hayashida, Masato Tanuma, Rei Yokoyama, Yumi Hirato, Hitoshi Hashimoto
    Altered Functional Connectivity of the Orbital Cortex and Striatum Associated with Catalepsy Induced by Dopamine D1 and D2 Antagonists "Biol Pharm Bull.
    doi: 10.1248/bpb.b20-01006. 2021;44(3):442-447.
    2021 Volume 44 Issue 3 Pages 442-447" Mar 2021
  22. N. Babaguchi, I. Echizen, J. Yamagishi, N. Nitta, Y. Nakashima, K.
    Nakamura, K. Kono, F. Fang, S. Myojin, Z. Kuang, H H. Nguyen, N-D T.Tieu:
    "Preventing Fake Information Generation Against Media Clone Attacks",
    IEICE Transactions on Information and Systems, vol. E104-D, no.1, pp. 2-11,
    January 2021. DOI: 10.1587/transinf.2020MUI0001
  23. I. Echizen, N. Babaguchi, J. Yamagishi, N. Nitta, Y. Nakashima, K.　Nakamura, K. Kono, F. Fang, S. Myojin, Z. Kuang, H H. Nguyen, N-D T.Tieu:
    "Generation and Detection of Media Clones",
    IEICE Transactions on Information and Systems, vol. E104-D, no.1, pp. 12-23, January 2021.
    DOI: 10.1587/transinf.2020MUI0002
  24. Kamimura,Y., and Ueda, M.
    “GPCR signaling regulation in Dictyostelium chemotaxis”,
    Meth. Mol. Biol., in press (2021).
  25. Ohtsuka, D., Ota, N., Amaya, S., Matsuoka, S., Tanaka, Y., and Ueda, M.
    “A sub-population of Dictyostelium discoideum cells shows extremely high sensitivity to cAMP for directional migration”,
    Biochem. Biophys. Res. Commun., 554: 131-137 (2021).
  26. Masahiro Yanagawa, Hirohiko Niioka, Masahiko Kusumoto, Kazuo Awai, Mitsuko Tsubamoto, Yukihisa Satoh, Tomo Miyata, Yuriko Yoshida, Noriko Kikuchi, Akinori Hata, Shohei Yamasaki, Shoji Kido, Hajime Nagahara, Jun Miyake, and Noriyuki Tomiyama,
    “Diagnostic performance for pulmonary adenocarcinoma on CT: comparison of radiologists with and without three-dimensional convolutional neural network”,
    European Radiology 31(4):1978-1986 (2021).
    doi: https://doi.org/10.1007/s00330-020-07339-x
  27. M. Iwamura, S. Mori, K. Nakamura, T. Tanoue, Y. Utsumi, Y. Makihara, D. Muramatsu, K. Kise, Y. Yagi,
    “Individuality-preserving Silhouette Extraction for Gait Recognition and Its Speedup,”
    IEICE Trans. on Information and Systems, Vol. E104-D, No. 7, Jul. 2021 (to appear).
  28. C. Xu, A. Sakata, Y. Makihara, N. Takemura, D. Muramatsu, Y. Yagi,
    “Uncertainty-aware Gait-based Age Estimation and Its Applications,”
    IEEE Transactions on Biometrics, Behavior, and Identity Science (T-BIOM) (published online on 14 May 2021).
  29. S. Kimura, Y. Aburakawa, F. Watanabe, S. Torashima, S. Igarashi, T. Nakamura, M. Yamaguchi,
    “Holographic Video Communication System Realizing Virtual Image Projection and Frontal Image Capture,”
    ITE Transactions on Media Technology and Applications, Vol. 9, No. 1, pp. 105-112, Jan. 2021.
  30. Y. Zhang, Y. Makihara, D. Muramatsu, J. Zhang, L. Niu, L. Zhang, Y. Yagi,
    “Learn to Walk Across Ages: Motion Augmented Multi-age Group Gait Video Translation,”
    IEEE Access, Vol. 9, pp. 40550-40559, Feb. 2021.
  31. X. Pan, T. Nakamura, X. Chen, M. Yamaguchi,
    “Lensless inference camera: incoherent object recognition through a thin mask with LBP map generation,”
    Optics Express, Vol. 29, No. 7, pp. 9758-9771, Mar. 2021.
  32. M. A. R. Ahad, M. Ahmed, A. D. Antar, Y. Makihara, and Y. Yagi,
    “Action recognition using Kinematics Posture Feature on 3D skeleton joint locations,”
    Pattern Recognition Letters, Vol. 145, pp. 216-224, May 2021.
  33. M. Khosravy, K. Nakamura, Y. Hirose, N. Nitta, N. Babaguchi:
    "Model Inversion Attack: Analysis under Gray-box Scenario on Deep Learning based Face Recognition System",
    KSII Transactions on Internet and Information Systems,
    Vol.15, No.3, pp.1100-1118, March 2021.
  34. Cryo‐EM structure of the CENP‐A nucleosome in complex with phosphorylated CENP‐C
    Mariko Ariyoshi, Fumiaki Makino, Reito Watanabe, Reiko Nakagawa, Takayuki Kato, Keiichi Namba, Yashhiro Arimura, Risa Fujita, Hitoshi Kurumizaka, Ei0ichi Okumuram Masatoshi Hara, Tatsuo Fukagawa
    EMBO JOURNAL,2021/1
  35. Extraction of protein dynamics information from cryo-EM maps using deep learning
    Shigeyuki Matsumoto, Shoichi Ishida, Mitsugu Araki, Takayuki Kato, Kei Terayama & Yasushi Okuno
    Nature Machine Intelligence,2021/2
  36. Two Distinct Conformations in 34 FliF Subunits Generate Three Different Symmetries within the Flagellar MS-Ring.
    Norihiro Takekawa, Akihiro Kawamoto, Mayuko Sakuma, Takayuki Kato, Seiji Kojima, Miki Kinoshita, Tohru Minamino, Keiichi Namba, Michio Homma, Katsumi Imada
    mBio, 2021/3
  37. Classification from Positive and Unlabeled Data Based on Likelihood Invariance for Measurement
    T. Yoshida, T. Washio, T. Ohshiro, M. Taniguchi
    Intelligent Data Analysis,　Jan 2021
  38. Odor Sensor System using Chemosensitive Resistor Array and Machine Learning
    R. Yatabe, A. Shunori, B. Wyszynski, Y. Hanai, A. Nakao, M. Nakatani, A. Oki, H. Oka, T. Washio, K. Toko
    IEEE Sensors Journal, Jan 2021
  39. F. Tai, K. Koike, H. Kawagoe, J. Ando, Y. Kumamoto, N. I. Smith, M. Sodeoka, K. Fujita,
    "Detecting nitrile-containing small molecules by infrared photothermal microscopy," Analyst, 146, 2307-2312 (2021).
  40. Field effect control of translocation dynamics in surround-gate nanopores
    M. Tsutsui, S. Ryuzaki, K. Yokota, Y. He, T. Washio, K. Tamada, T. Kawai
    Communications Materials, Mar 2021
  41. Kakizuka T, Hara Y, Ohta Y, Mukai A, Ichiraku A, Arai Y, Ichimura T, Nagai T, Horikawa K
    Cellular logics bringing the symmetry breaking in spiral nucleation revealed by trans-scale imaging
    bioRxiv, June 2020
  42. Synthesis of computer simulation and machine learning for achieving the best material properties of filled rubber
    T. Kojima, T. Washio, S. Hara, M. Koishi
    Scientific Reports, Oct 2020
  43. Digital pathology platform for respiratory tract diagnosis via multiplex single-particle detections
    A. Arima, M. Tsutsui, T. Yoshida, K. Tatematsu, T. Yamazaki, K. Yokota, S. Kuroda, T. Washio, Y. Baba, T. Kawai
    ACS Sensor, Sep 2020
  44. Machine learning-driven electronic identifications of single pathogenic bacteria
    S. Hattori, R. Sekido, L.W. Leong, M. Tsutsui, A. Arima, M. Tanaka, K. Yokota, T. Washio, T. Kawai, M. Okochi
    Scientific Reports, Sep 2020
  45. Chihiro Kawaguchi, Norihito Shintani, Atsuko Hayata-Takano, Michiyoshi Hatanaka, Ai Kuromi, Reiko Nakamura, Yui Yamano, Yusuke Shintani, Katsuya Nagai, Soken Tsuchiya, Yukihiko Sugimoto, Atsushi Ichikawa, Yasushi Okuno, Yoshihiro Urade, Hiroyuki Hirai, Kin-Ya Nagata, Masataka Nakamura, Shuh Narumiya, Takanobu Nakazawa, Atsushi Kasai , Yukio Ago , Kazuhiro Takuma , Akemichi Baba , Hitoshi Hashimoto
    Lipocalin-type prostaglandin D synthase regulates light-induced phase advance of the central circadian rhythm in mice "2020 Oct 8;3(1):557.
    doi: 10.1038/s42003-020-01281-w.
    PMID: 33033338", Oct 2020
  46. Shuto Takeuchi, Takuya Kawanai, Ryosuke Yamauchi, Lu Chen, Tatsunori Miyaoka, Mei Yamada, Atsuko Hayata, Takanobu Nakazawa, Koji Yano, Naotaka Horiguchi, Shinsaku Nakagawa, Kazuhiro Takuma, James Waschek, Hitoshi Hashimoto, Yukio Ago
    Activation of the VPAC2 receptor impairs axon outgrowth and decreases dendritic arborization in mouse cortical neurons by a PKA-dependent mechanism
    Frontiers in Neuroscience, section Neuroendocrine Science, Manuscript ID: 523221,
    Front Neurosci. 2020; 14: 521.doi: 10.3389/fnins.2020.00521
    PMCID: PMC7287155, PMID: 32581681
    Published online 2020 Jun 4.
  47. Solid-State Nanopore Platform Integrated with Machine-Learning for Digital Diagnosis of Virus Infection
    A. Arima, M. Tsutsui, T. Washio, Y. Baba, T. Kawai
    Analytical Chemistry, Nov 2020
  48. S. A. Hussain, T. Kubo, N. Hall, D. Gala, K. Hampson, R. Parton, M. A. Phillips, M. Wincott, K. Fujita, I. Davis, I. Dobbie, M. J. Booth,
    "Wavefront‐sensorless adaptive optics with a laser‐free spinning disk confocal microscope,"
    J. Microsc. (Online).(2020)
  49. H. Lee, K. Kang, K. Mochizuki, C. Lee, K.-A. Toh, S. Lee, K. Fujita, D. Kim,
    "Surface plasmon localization-based super-resolved Raman microscopy,
    " Nano Lett., 20 (12) 8951?8958 (2020).
  50. K. Koike, K. Bando, J. Ando, H. Yamakoshi, N. Terayama, K. Dodo, N. I. Smith, M. Sodeoka, K. Fujita,
    Quantitative drug dynamics visualized by alkyne-tagged plasmonic-enhanced Raman microscopy,"
    ACS Nano, 14 (11) 15032?15041 (2020).
  51. A. Taguchi, A. Nakayama, R. Oketani, S. Kawata, K. Fujita,
    "Multiphoton-excited deep ultraviolet photolithography for 3D nanofabrication,"
    ACS Appl. Nano Mater., 3 (11) 11434?11441 (2020).
  52. Y.-S. Duh, Y. Nagasaki, Y.-L. Tang, P.-H. Wu, H.-Y. Cheng, T.-H. Yen, H.-X. Ding, K. Nishida, I. Hotta, J.-H. Yang, Y.-P. Lo, K.-P. Chen, K. Fujita, C.-W. Chang, K.-H. Lin, J. Takahara, and S.-W. Chu,
    "Giant photothermal nonlinearity in a single silicon nanostructure."
    Nat Commun 11, 4101 (2020).
  53. K. Nishida, G. Deka, N. I. Smith, S.-W. Chu*, K. Fujita*,
    "Nonlinear scattering of near-infrared light for imaging plasmonic nanoparticles in deep tissue,"
    ACS Photonics, 7, 2139?2146 (2020).
  54. K. Bando, Z. Zhang, D. Graham, K. Faulds, K. Fujita*, S. Kawata,
    "Dynamic pH measurement of intracellular pathways using nano-plasmonic assemblies,"
    Analyst, 145, 5768 - 5775 (Jun.2020).
  55. N. Nitta, K. Nakamura, N. Babaguchi:
    "Constructing Geospatial Concept Graphs from Tagged Images for Geo-Aware Fine-Grained Image Recognition,",
    ISPRS International Journal of Geo-Information, Vol. 9, No. 6, 354, 23 pages, May 2020.
  56. M. Khosravy, N. Gupta, N. Patel, N. Dey, N. Nitta, N. Babaguchi:
    "Probabilistic Stone's Blind Source Separation with Application to Channel Estimation and Multi-node Identification in MIMO IoT Green Communication and Multimedia Systems",
    Computer Communications, vol.157, pp. 423-433, May 2020.
  57. Kuboki T, Ebata H, Matsuda T, Arai Y, Nagai T, Kidoaki S
    Hierarchical development of motile polarity in durotactic cells just crossing an elasticity boundary
    Cell Struct. Funct., 45, 1, 33-43, 2020.
  58. Araki S, Nakano M, Tsugane M, Sunaga F, Hattori M, Nagai T, Suzuki H.
    A simple microfluidic device for live-imaging of the vertical section of epithelial cells
    Analyst, 145, 667-674, 2020
  59. Quantitative MALDI-MS/MS assay for serum cortisol through charged derivatization.
    Nakamura M,Moritsuna M,Yuda K,Fujimura S,Sugiura Y,Shimma S,Nishimoto K,Nishikawa T,Suematsu M,Ogawa S,Higashi T
    Journal of pharmaceutical and biomedical analysis 178, 112912 (2020)
  60. R. Oketani, H. Suda, K. Uegaki, T. Kubo, T. Matsuda, M. Yamanaka, Y. Arai, N. I. Smith, T. Nagai, K. Fujita*,
    "Visible-wavelength two-photon excitation microscopy with multifocus scanning for volumetric live-cell imaging,"
    J. Biomed. Opt., 25(1), 014502 (2020).
  61. Masato Tanuma, Atsushi Kasai,1 Kazuki Bando, Naoyuki Kotoku, Kazuo Harada, Masafumi Minoshima, Kosuke Higashino, Atsushi Kimishima, Masayoshi Arai, Yukio Ago, Kaoru Seiriki, Kazuya Kikuchi, Satoshi Kawata, Katsumasa Fujita, Hitoshi Hashimoto
    “Direct visualization of an antidepressant analog using surface-enhanced Raman scattering in the brain”,
    JCI Insight. 2020;5(6):e133348. https://doi.org/10.1172/jci.insight.133348. (2020)
  62. Michitaka Yoshida , Toshiki Sonoda, Hajime Nagahara, Kenta Endo, Yukinobu Sugiyama, and Rin-ichiro Taniguchi,
    "High-Speed Imaging Using CMOS Image Sensor With Quasi Pixel-Wise Exposure",
    IEEE TRANSACTIONS ON COMPUTATIONAL IMAGING, Vol. 6, pp. 463-476, 2020.
  63. Pathogenic POGZ mutation causes impaired cortical development and reversible autism-like phenotypes,
    Kensuke Matsumura, Kaoru Seiriki, Shota Okada, Masashi Nagase, Shinya Ayabe, Ikuko Yamada, Tamio Furuse, Hirotoshi Shibuya, Yuka Yasuda, Hidenaga Yamamori, Michiko Fujimoto, Kazuki Nagayasu, Kana Yamamoto, Kohei Kitagawa, Hiroki Miura, Nanaka Gotoda-Nishimura, Hisato Igarashi, Misuzu Hayashida, Masayuki Baba, Momoka Kondo, Shigeru Hasebe, Kosei Ueshima, Atsushi Kasai, Yukio Ago, Atsuko Hayata-Takano, Norihito Shintani, Tokuichi Iguchi, Makoto Sato, Shun Yamaguchi, Masaru Tamura, Shigeharu Wakana, Atsushi Yoshiki, Ayako M. Watabe, Hideyuki Okano, Kazuhiro Takuma, Ryota Hashimoto, Hitoshi Hashimoto & Takanobu Nakazawa (2020)
  64. Yoshioka, D., Fukushima, S., Koteishi, H., Okuno, D., Ide, T., Matsuoka, S., and Ueda, M. (2020) ,
    Single-molecule imaging of PI(4,5)P2 and PTEN in vitro reveals a positive feedback mechanism for PTEN membrane binding, Communications Biology 3, Article number: 92. (doi: 10.1038/s42003-020-0818-3)
  65. Yamazaki, S., Hashimura, H., Morimoto, Y. V., Miyanaga, Y., Matsuoka, S., Kamimuraa,Y., and Ueda, M. (2020),
    Talin B regulates collective cell migration via PI3K signaling in the mound of Dictyostelium discoideum, Biochem. Biophys. Res. Commun., accepted. (doi: 10.1016/j.bbrc.2020.02.060.)
  66. Hiraoka, H. Nakano, T,. Kuwana, S., Fukuzawa, M., Hirano, Y., Ueda, M., Haraguchi, T., Hiraoka, Y. (2020),
    Intracellular ATP levels influence cell fates in Dictyostelium discoideum differentiation, Genes to Cells, accepted (doi:10.1111/gtc.12763)
  67. Takeo E, Fukusaki E, Shimma S.
    Mass Spectrometric Enzyme HistochemistryMethod Developed for Visualizing In Situ Cholinesterase Activity inMus musculus and Drosophila melanogaster. Anal Chem.
    2020 Sep15;92(18):12379-12386.
    doi: 10.1021/acs.analchem.0c02106. Epub 2020 Aug 31.
  68. Shimma S, Makino Y, Kojima K, Hirata T. Quantitative
    Visualization ofLanthanum Accumulation in Lanthanum Carbonate-Administered Human Stomach TissuesUsing Mass Spectrometry Imaging. Mass Spectrom (Tokyo).
    2020;9(1):A0086. doi:10.5702/massspectrometry.A0086. Epub 2020 Jul 13.
  69. Sato E, Tsunokuni Y, Kaneko M, Saigusa D, Saito R, Shimma S, Sekimoto A,Kawana Y, Oe Y, Ito S, Sato H, Takahashi N.
    Metabolomics of a mouse model of preeclampsia induced by overexpressing soluble fms-like tyrosine kinase 1.Biochem Biophys Res Commun.
    2020 Jul 5;527(4):1064-1071.
    doi:10.1016/j.bbrc.2020.04.079. Epub 2020 May 21.
  70. Kamata T, Shima N, Miki A, Matsuo E, Yamamoto T, Tsuchihashi H, Sato T, Shimma S, Katagi M.
    High Spatial-Resolution Matrix-Assisted Laser Desorption/Ionization-Ion Trap-Time-of-Flight Tandem Mass Spectrometry Imaging for Depicting Longitudinal and Transverse Distribution of Drugs Incorporated into Hair. Anal Chem.
    2020 Apr 21;92(8):5821-5829.
    doi: 10.1021/acs.analchem.9b05401. Epub 2020 Apr 1.
  71. Putri Wisman A, Tamada Y, Hirohata S, Fukusaki E, Shimma S. Metabolic
    Visualization Reveals the Distinct Distribution of Sugars and Amino Acids in
    Rice Koji. Mass Spectrom (Tokyo). 2020;9(1):A0089. doi:10.5702/massspectrometry.A0089. Epub 2020 Aug 26.
  72. Arno Germond, Yulia Panina, Mikio Shiga, Hirohiko Niioka, and Tomonobu M. Watanabe,
    “Following embryonic stem cells their differentiated progeny and cell-state changes during iPS reprogramming by Raman spectroscopy”,
    Analytical Chemistry, 92, 22, 14915-14923 (2020).
    doi: https://doi.org/10.1021/acs.analchem.0c01800
  73. Naoki Yamato, Hirohiko Niioka*, Jun Miyake, and Mamoru Hashimoto*,
    “Improvement of nerve imaging speed with coherent anti-Stokes Raman scattering rigid endoscope using deep-learning noise reduction”,
    Scientific Reports, 10, 15212, 11 pages (2020).
    doi: https://doi.org/10.1038/s41598-020-72241-x
  74. Shin-ichi Tanaka, Hiroki Wadati, Kazuhisa Sato, Hidehiro Yasuda, and Hirohiko Niioka,
    “Red-Fluorescent Pt Nanoclusters for Detecting and Imaging HER2 in Breast Cancer Cells”,
    ACS Omega, 5, 37, 23718-23727 (2020).
    doi: https://doi.org/10.1021/acsomega.0c02578
  75. Naoki Yamato, Mana Matsuya, Hirohiko Niioka*, Jun Miyake, Mamoru Hashimoto*,
    “Nerve segmentation with deep learning from label-free endoscopic images obtained using coherent anti-Stokes Raman scattering”,
    Biomolecules, 10(7), 1012 (2020).
    doi: https://doi.org/10.3390/biom10071012
  76. Kiminori Yanagisawa, Masayasu Toratani, Ayumu Asai, Masamitsu Konno, Hirohiko Niioka, Tsunekazu Mizushima, Taroh Satoh, Jun Miyake, Kazuhiko Ogawa, Andrea Vecchione, Yuichiro Doki, Hidetoshi Eguchi, Hideshi Ishii,
    “Convolutional Neural Network Can Recognize Drug Resistance of Single Cancer Cells”,
    International journal of molecular sciences, 21(9), 3166, 7 pages (2020).
    doi: 10.3390/ijms21093166
  77. Chi Xu, Yasushi Makihara, Xiang Li, Yasushi Yagi and Jianfeng Lu,
    “Cross-View Gait Recognition using Pairwise Spatial Transformer Networks,”
    IEEE Transactions on Circuits and Systems for Video Technology, pp. 260-274, Feb. 2020 (Published online: 21 Feb. 2020).
  78. R. Liao, Y. Makihara, D. Muramatsu, I. Mitsugami, Y. Yagi, K. Yoshiyama, H. Kazui, M. Takeda,
    “A Video-Based Gait Disturbance Assessment Tool for Diagnosing Idiopathic Normal Pressure Hydrocephalus,”
    IEEJ Transactions on Electrical and Electronic Engineering, Vol. 15, No. 3, pp. 433-441, Feb. 2020.
  79. M.A.R. Ahad, T.T. Ngo, A.D. Antar, M. Ahmed, T. Hossain, D. Muramatsu, Y. Makihara, S. Inoue, Y. Yagi,
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    Microscopy, 67(2), 89-98, 2018
  186. Kushida Y, Arai Y, Shimono K, and Nagai T.
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  187. Maeshima K*, Matsuda T*, Shindo Y*, Imamura H*, Tamura S, Imai R, Kawakami S, Nagashima R, Soga T, Noji H, Oka K and Nagai T.
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    Current Biology, 28(3), 444-451.e6, 2018 (* equal contribution)
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    Cell Chemical Biology, 25(3), 330-338, 2018
  189. Arno Germond, Taro Ichimura, Liang-da Chiu, Katsumasa Fujita, Tomonobu M. Watanabe, Hideaki Fujita
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    Scientific Reports 8, doi:10.1038/s41598-018-30276-1 (Aug. 2018)
  190. Arno Germond, Taro Ichimura, Takaaki Horinouchi, Hideaki Fujita, Chikara Furusawa, Tomonobu M. Watanabe
    "Raman spectral signature reflects transcriptomic features of antibiotic resistance in Escherichia coli"
    Communication Biology, doi:10.1038/s42003-018-0093-8 (Jul. 2018)
  191. Shintani Y, Hayata-Takano A, Moriguchi K, Nakazawa T, Ago Y, Kasai A, Seiriki K, Shintani N, Hashimoto H.
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    PLoS One. 13: e0196946, 2018.
  192. Inoue N, Hirouchi T, Kasai A, Higashi S, Hiraki N, Tanaka S, Nakazawa T, Nunomura K, Lin B, Omori A, Hayata-Takano A, Kim YJ, Doi T, Baba A, Hashimoto H, Shintani N.
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    Biochem Biophys Res Commun 495: 1992-1997, 2018
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    EMBO Rep 19: e44860, 2018
  194. Atsushi Doi, Ryosuke Oketani, Yasunori Nawa, and Katsumasa Fujita
    "High-resolution imaging in two-photon excitation microscopy using in situ estimations of the point spread function,"
    Biomedical Optics Express 9, 202 (2018)
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    Nature Communications, 9, Article number: 3061, doi: 10.1038/s41467-018-05524-7 (2018)
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    "Direct cell-cell contact between mature osteoblasts and osteoclasts dynamically controls their functions in vivo."
    Nat. Commun., 9(1):300.
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    "In vivo live imaging of bone cells".
    Histochem. Cell Biol., 149(4): 417-422.
  198. Ueda Y, Ishiwata T, Shinji S, Arai T, Matsuda Y, Aida J, Sugimoto N, Okazaki T, Kikuta J, Ishii M, Sato M. (2018)
    "In vivo imaging of T cell lymphoma infiltration process at the colon."
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    Methods Mol. Biol, 1763: 145-151.
  200. Matsumoto S, Kikuta J, Ishii M. (2018)
    "Intravital imaging of liver cell dynamics."
    Methods Mol. Biol, 1763: 137-143
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    "Bone imaging: Osteoclast and osteoblast dynamics."
    Methods Mol. Biol, 1763: 137-143
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    Sci. Rep., 14(1): 7504.
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    "Dynamic analyses of the short-term effects of different bisphosphonates using intravital two-photon microscopy."
    JBMR Plus, published online.
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  209. M.Z. Uddin, T.T. Ngo, Y. Makihara, N. Takemura, X. Li, D. Muramatsu, Y. Yagi,
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    IPSJ Trans. on Computer Vision and Applications, Vol. 10, No. 5, pp. 1-11, May 2018.
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    Multimedia Tools and Applications, First Online, pp. 1-22, Apr. 2018.
  211. N. Takemura, Y. Makihara, D. Muramatsu, T. Echigo, Y. Yagi,
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  212. Takuya Yoda , Hajime Nagahara, Rin-ichiro Taniguchi, Keiichiro Kagawa, Keita Yasutomi and Shoji Kawahito,
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  213. Rafael Alves Roberto, Hideaki Uchiyama, Joao Paulo Lima, Hajime Nagahara, Rin-ichiro Taniguchi, Veronica Teichrieb,
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  214. Yusuke Yagi, Keita Takahashi, Toshiaki Fujii, Toshiki Sonoda, Hajime Nagahara,
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バナースペース

Division of Transdimensional Life Imaging, Institute for Open and Transdisciplinary Research Initiatives, Osaka University

Yamadaoka 2-1, Suita, Osaka 565-0871

TEL +81-6-6105-6263